castanyes blaves
Random ramblings about some random stuff, and things; but more stuff than things -- all in a mesmerizing and kaleidoscopic soapbox-like flow of words.5/15/2008
Install the Ensembl Compara API in 12 lines
mkdir src
cd src
cvs -d :pserver:cvs@code.open-bio.org:/home/repository/bioperl login # password is cvs
cvs -z3 -d :pserver:cvs@code.open-bio.org:/home/repository/bioperl checkout -r bioperl-release-1-2-3 bioperl-live
cvs -d :pserver:cvsuser@cvs.sanger.ac.uk:/cvsroot/ensembl login # password is CVSUSER
cvs -z3 -d :pserver:cvsuser@cvs.sanger.ac.uk:/cvsroot/ensembl checkout -r branch-ensembl-49 ensembl
cvs -z3 -d :pserver:cvsuser@cvs.sanger.ac.uk:/cvsroot/ensembl checkout -r branch-ensembl-49 ensembl-compara
PERL5LIB=${PERL5LIB}:${HOME}/src/bioperl-live
PERL5LIB=${PERL5LIB}:${HOME}/src/ensembl/modules
PERL5LIB=${PERL5LIB}:${HOME}/src/ensembl-compara/modules
export PERL5LIB
It's easy :-)
Labels: ensembl
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