castanyes blaves

Random ramblings about some random stuff, and things; but more stuff than things -- all in a mesmerizing and kaleidoscopic soapbox-like flow of words.

3/03/2008

 

Ensembl GeneTree TARDBP (TDP-43)

Researchers say they have made the most significant breakthrough for 15 years in the quest to understand the fatal condition Motor Neurone Disease (MND).

http://news.bbc.co.uk/1/hi/health/7266832.stm

http://www.ensembl.org/Homo_sapiens/genetreeview?gene=TARDBP

This is the Ensembl GeneTree for the TARDBP family, showing the evolutionary history of these genes in the different species present in the Ensembl database:

This tree shows the effect of a whole-genome-duplication (WGS) in the fish genomes, resulting in two copies of it in each of the five fish genomes in Ensembl v48. There is a duplication in Drosophila melanogaster, that may have taken place before the speciation of the melanogaster subgroup (D.melanogaster,D.simulans,D.sechellia).

There are 3 extra duplications, one in Dog, one in Monodelphis and a double duplication in Macaca mulatta. Preliminary data seems to indicate that the double duplication is also present in the orang genome, which isn't a very parsimonious occurrence. If we consider
that the duplication took place at the Catarrhini level, it requires three gene loss events in Human and three more in Chimp to explain why we see four copies in the rhesus and orang genomes. All of them seem like real genes, without much doubt about their prediction.




Technorati Tags:

Comments: Post a Comment

Subscribe to Post Comments [Atom]





<< Home

Archives

200409   200412   200501   200502   200503   200504   200505   200506   200507   200508   200509   200510   200511   200512   200601   200602   200603   200604   200605   200606   200607   200608   200609   200610   200611   200612   200701   200702   200703   200704   200705   200707   200708   200709   200710   200711   200712   200801   200802   200803   200804   200805   200806   200807   200808   200809   200810   200811   200812   200901   200902   200903   200904   200905   200906   200907   200908   200909   200912   201001   201002   201003   201004   201007   201009   201011   201102  

This page is powered by Blogger. Isn't yours?

Subscribe to Posts [Atom]