castanyes blaves
Random ramblings about some random stuff, and things; but more stuff than things -- all in a mesmerizing and kaleidoscopic soapbox-like flow of words.10/24/2007
Anton Enright -- Network based clustering and analysis of the Mouse Transcriptome
a graph with weights -- a matrix with markov transition probabilities
inflation and expansion operators
from a one step to a two step path -- promote the flow in the strong paths -- third step -- fourth -- etc... obtain centers of flow
cytoscape -- tool to draw graphs -- seemed all done
application to expression data -- relate two genes in terms of their expression
did biolayout express 3D -- implemented in 3D using OpenGL (JOGL)
www.biolayout.org
Q&A
protein protein interactions? yes, we tried
Stijn is now working on hierarchical MCL
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